We should change the alphabet order to conform to qwerty.

@alyx
I cannot believe, just how much easier my life became, after I switched to czech qwerty keyboard.

I still cannot believe, that other people are using that default trash setting.

@LukeAlmighty
qwerty is kinda bad for a whole lot of reasons, but a primary point that people, who are not in a native English speaking environment, should consider is that it was created with the English language in mind. So apart from the obvious lack of special characters your language might need, you also have the issue of even the standards keys not being placed in an optimal distribution.
Don't know much about Czech qwerty, but if it does anything like the French azerty, where it shuffles some of the standard Latin letters around too, then I can see why it would be better.